Imaging Flow Cytometry and Flow Cytometric Analysis Core

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Amnis ImageStreamX MkII

The Amnis ImageStreamX is equipped with two CCD cameras, which can acquire up to 12 images simultaneously of each cell or particle. However, brightfield images must be collected on both Camera 1 and Camera 2 to precisely align all 12 images during analyses. Therefore, the system can locate and quantify the intensity and distribution of up to 10 different fluorescent signals on, within, or between cells in cell conjugates. Applications include:

  • Intracellular co-localization
  • Nuclear translocation
  • Internalization and phagocytosis
  • Cell-cell interaction
  • Cell death and autophagy
  • Cell cycle and mitosis

For more information, visit the manufacturer's website: https://cytekbio.com/pages/imagestream

When planning an imaging flow cytometry experiment and choosing fluorochromes, it is important to know the fluorochromes' specific excitation and emission wavelengths, as well as the lasers, filters, and detectors available on the instrument. Below is the information for the Amnis ImageStreamX MkII.

Amnis ImageStreamX MkII Configuration and Fluorochromes
CameraExcitation LaserChannelBandpass FilterIdeal dyesAdditional Fluorochromes
Camera 1Bright fieldCh1Bright FieldBright Field

Blue

488 nm

Ch2528/65(480-560)FITC, AF488, GFPCFSE, YFP, DyLight488, PKH67-membrane label, LysoTrackerGreen
Ch3577/35560-595PECy3, DSRed, PKH67-membrane label SYTOX Orange
Ch4610/30595-642PE-TexasRed*RFP, PE-AF610, eFluor625, Qdot625* Ch4 & Ch10 BF**
Ch5702/85642-745PE-Cy5*, PE-AF647PI, 7AAD, PerCP-Cy5.5, eFluor 650, Draq 5
Ch6765/40745-785PE-Cy7*, PE-AF750or use for side scatter (SSC)
Camera 2

Violet

405 nm

Ch7457/45435-505DAPI, AF405, BV421Hoechst, eFluor 450, DyLight 405, CFP, Live/Dead violet
Ch8537/65505-570BV510AF430, eFluor506, Qdot 525, Cascade yellow
Ch9582/25570-595Bright Field Qdot565, Qdot585, eFluor565
Ch10610/30595-642Qdot 605, Qdot625, eFluor625, BV605 Ch4 & Ch10 BF**
Ch11702/85642-745BV711, eFluor700, Qdot 705*
Ch12765/40745-785Qdot 800*, BV786 or use for side scatter

Red

640 nm

Ch11702/85642-745AF647, AF660, AF680APC, Cy5, AF660, Draq 5*, DyLight649, DyLight680, PE-AF647*, PE-Cy5
Ch12765/40745-785APC-Cy7, APC-AF750APC-H7, Cy7, APC-eFluor780, AF-750, DyLight750, PE-Cy7* PE- AF750* or use for side scatter
*It is important to remember that many fluorescent dyes are excited by more than one laser and fluoresce in multiple channels. It is very helpful to use a spectral viewer when planning an experiment.
** There are options to switch the Brightfield to different channels if needed (Ch1 & Ch9, Ch2 & Ch8, Ch4 & Ch10, and Ch6 & Ch12).

Ideal fluorochromes for this instrument are AF488, PE, PE-TexasRed, SSC-Ch6, DAPI (or BV421), AF647, and APC-Cy7.